Mercurial > repos > bcclaywell > argo_navis
comparison venv/lib/python2.7/site-packages/planemo/commands/cmd_serve.py @ 0:d67268158946 draft
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
| author | bcclaywell |
|---|---|
| date | Mon, 12 Oct 2015 17:43:33 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:d67268158946 |
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| 1 import click | |
| 2 | |
| 3 from planemo.cli import pass_context | |
| 4 from planemo import galaxy_serve | |
| 5 from planemo import options | |
| 6 | |
| 7 | |
| 8 @click.command('serve') | |
| 9 @options.optional_tools_arg(multiple=True) | |
| 10 @options.galaxy_serve_options() | |
| 11 @pass_context | |
| 12 def cli(ctx, paths, **kwds): | |
| 13 """Launch a Galaxy instance with the specified tool in the tool panel. | |
| 14 | |
| 15 The Galaxy tool panel will include just the referenced tool or tools (by | |
| 16 default all the tools in the current working directory) and the upload | |
| 17 tool. | |
| 18 | |
| 19 planemo will search parent directories to see if any is a Galaxy instance | |
| 20 - but one can pick the Galaxy instance to use with the ``--galaxy_root`` | |
| 21 option or force planemo to download a disposable instance with the | |
| 22 ``--install_galaxy`` flag. | |
| 23 | |
| 24 ``planemo`` will run the Galaxy instance in an existing virtualenv if one | |
| 25 exists in a ``.venv`` directory in the specified ``--galaxy_root``. | |
| 26 Otherwise, the Galaxy instance will run in a clean virtualenv created in | |
| 27 ``/tmp``. | |
| 28 | |
| 29 ``planemo`` uses temporarily generated config files and environment | |
| 30 variables to attempt to shield this execution of Galaxy from manually | |
| 31 launched runs against that same Galaxy root - but this may not be bullet | |
| 32 proof yet so please careful and do not try this against production Galaxy | |
| 33 instances. | |
| 34 """ | |
| 35 galaxy_serve.serve(ctx, paths, **kwds) |