--- a/BEDTools-Version-2.14.3/src/utils/bedGraphFile/bedGraphFile.cpp	Thu Nov 03 10:25:04 2011 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,58 +0,0 @@
-/*****************************************************************************
-  bedGraphFile.cpp
-
-  (c) 2010 - Assaf Gordon
-  Hall Laboratory
-  Department of Biochemistry and Molecular Genetics
-  University of Virginia
-  aaronquinlan@gmail.com
-
-  Licenced under the GNU General Public License 2.0 license.
-******************************************************************************/
-#include "bedGraphFile.h"
-#include <sstream>
-
-// Constructor
-BedGraphFile::BedGraphFile(string &_file) :
-    bedGraphFile(_file),
-    _bedGraphStream(NULL)
-{}
-
-
-// Destructor
-BedGraphFile::~BedGraphFile() {
-    Close();
-}
-
-
-// Open the BEDGRAPH file
-void BedGraphFile::Open() {
-    if (bedGraphFile == "stdin" || bedGraphFile == "-") {
-        _bedGraphStream = &cin;
-    }
-    else {
-        _bedGraphStream = new ifstream(bedGraphFile.c_str(), ios::in);
-
-        if (isGzipFile(_bedGraphStream) == true) {
-            delete _bedGraphStream;
-            _bedGraphStream = new igzstream(bedGraphFile.c_str(), ios::in);
-        }
-        // can we open the file?
-        if ( !(_bedGraphStream->good()) ) {
-            cerr << "Error: The requested bed file (" << bedGraphFile << ") could not be opened. Exiting!" << endl;
-            exit (1);
-        }
-    }
-}
-
-
-// Close the BEDGRAPH file
-void BedGraphFile::Close() {
-    if (bedGraphFile != "stdin" && bedGraphFile != "-") {
-        if (_bedGraphStream) {
-            delete _bedGraphStream;
-            _bedGraphStream = NULL ;
-        }
-    }
-}
-