Mercurial > repos > aaronquinlan > multi_intersect
diff BEDTools-Version-2.14.3/src/slopBed/slopBed.h @ 1:bec36315bd12 default tip
Deleted selected files
author | aaronquinlan |
---|---|
date | Sat, 19 Nov 2011 14:17:03 -0500 |
parents | dfcd8b6c1bda |
children |
line wrap: on
line diff
--- a/BEDTools-Version-2.14.3/src/slopBed/slopBed.h Thu Nov 03 10:25:04 2011 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,59 +0,0 @@ -/***************************************************************************** - slopBed.h - - (c) 2009 - Aaron Quinlan - Hall Laboratory - Department of Biochemistry and Molecular Genetics - University of Virginia - aaronquinlan@gmail.com - - Licenced under the GNU General Public License 2.0 license. -******************************************************************************/ - -#include "bedFile.h" -#include "genomeFile.h" - -#include <vector> -#include <iostream> -#include <fstream> -#include <map> -#include <cstdlib> -#include <ctime> -using namespace std; - - -//************************************************ -// Class methods and elements -//************************************************ -class BedSlop { - -public: - - // constructor - BedSlop(string &bedFile, string &genomeFile, bool forceStrand, float leftSlop, float rightSlop, bool fractional); - - // destructor - ~BedSlop(void); - - - -private: - - string _bedFile; - string _genomeFile; - - bool _forceStrand; - float _leftSlop; - float _rightSlop; - bool _fractional; - - BedFile *_bed; - GenomeFile *_genome; - - // methods - - void SlopBed(); - - // method to add requested "slop" to a single BED entry - void AddSlop(BED &bed, int leftSlop, int rightSlop); -};