Mercurial > repos > aaronquinlan > multi_intersect
diff BEDTools-Version-2.14.3/src/multiIntersectBed/intervalItem.h @ 1:bec36315bd12 default tip
Deleted selected files
author | aaronquinlan |
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date | Sat, 19 Nov 2011 14:17:03 -0500 |
parents | dfcd8b6c1bda |
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--- a/BEDTools-Version-2.14.3/src/multiIntersectBed/intervalItem.h Thu Nov 03 10:25:04 2011 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,64 +0,0 @@ -/***************************************************************************** - intervalItem.h - - (c) 2010 - Assaf Gordon - Hall Laboratory - Department of Biochemistry and Molecular Genetics - University of Virginia - aaronquinlan@gmail.com - - Licenced under the GNU General Public License 2.0 license. -******************************************************************************/ -#ifndef INTERVALITEM_H -#define INTERVALITEM_H - -#include <string> -#include <queue> - -enum COORDINATE_TYPE { - START, - END -}; - -/* - An interval item in the priority queue. - - An IntervalItem can mark either a START position or an END position. - */ -class IntervalItem -{ - - -public: - int source_index; // which source BedGraph file this came from - COORDINATE_TYPE coord_type; // is this the start or the end position? - CHRPOS coord; - - IntervalItem () : - source_index(-1), - coord_type(START), - coord(0) - {} - - IntervalItem(int _index, COORDINATE_TYPE _type, CHRPOS _coord) : - source_index(_index), - coord_type(_type), - coord(_coord) - {} - - IntervalItem(const IntervalItem &other) : - source_index(other.source_index), - coord_type(other.coord_type), - coord(other.coord) - {} - - bool operator< ( const IntervalItem& other ) const - { - return this->coord > other.coord; - } -}; - -// our priority queue -typedef std::priority_queue<IntervalItem> INTERVALS_PRIORITY_QUEUE; - -#endif