--- a/BEDTools-Version-2.14.3/src/mergeBed/mergeBed.h	Thu Nov 03 10:25:04 2011 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,59 +0,0 @@
-/*****************************************************************************
-  mergeBed.h
-
-  (c) 2009 - Aaron Quinlan
-  Hall Laboratory
-  Department of Biochemistry and Molecular Genetics
-  University of Virginia
-  aaronquinlan@gmail.com
-
-  Licenced under the GNU General Public License 2.0 license.
-******************************************************************************/
-#include "bedFile.h"
-#include <vector>
-#include <algorithm>
-#include <numeric>
-#include <iostream>
-#include <fstream>
-#include <limits.h>
-#include <stdlib.h>
-
-using namespace std;
-
-
-//************************************************
-// Class methods and elements
-//************************************************
-class BedMerge {
-
-public:
-
-  // constructor
-  BedMerge(string &bedFile, bool numEntries, 
-           int maxDistance, bool forceStrand, 
-           bool reportNames, bool reportScores, const string &scoreOp);
-
-  // destructor
-  ~BedMerge(void);
-
-  void MergeBed();
-  void MergeBedStranded();
-
-private:
-
-    string _bedFile;
-    bool   _numEntries;
-    bool   _forceStrand;
-    bool   _reportNames;
-    bool   _reportScores;
-    string _scoreOp;
-    int    _maxDistance;
-    // instance of a bed file class.
-    BedFile *_bed;
-
-    void Report(string chrom, int start, int end, const vector<string> &names, const vector<string> &scores, int mergeCount);
-    void ReportStranded(string chrom, int start, int end, const vector<string> &names, const vector<string> &scores, int mergeCount, string strand);
-    void ReportMergedNames(const vector<string> &names);
-    void ReportMergedScores(const vector<string> &scores);
-    
-};