--- a/BEDTools-Version-2.14.3/src/flankBed/flankBed.h	Thu Nov 03 10:25:04 2011 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,63 +0,0 @@
-/*****************************************************************************
-  flankBed.h
-
-  (c) 2009 - Aaron Quinlan
-  Hall Laboratory
-  Department of Biochemistry and Molecular Genetics
-  University of Virginia
-  aaronquinlan@gmail.com
-
-  Licenced under the GNU General Public License 2.0 license.
-******************************************************************************/
-
-#include "bedFile.h"
-#include "genomeFile.h"
-
-#include <vector>
-#include <iostream>
-#include <fstream>
-#include <map>
-#include <cstdlib>
-#include <ctime>
-using namespace std;
-
-
-//************************************************
-// Class methods and elements
-//************************************************
-class BedFlank {
-
-public:
-
-    // constructor
-    BedFlank(string &bedFile, string &genomeFile, bool forceStrand, float leftSlop, float rightSlop, bool fractional);
-
-    // destructor
-    ~BedFlank(void);
-
-
-
-private:
-
-    string _bedFile;
-    string _genomeFile;
-
-    bool   _forceStrand;
-    float  _leftFlank;
-    float  _rightFlank;
-    bool   _fractional;
-
-    BedFile *_bed;
-    GenomeFile *_genome;
-
-    // methods
-
-    void FlankBed();
-
-    // method to grab requested flank w.r.t. a single BED entry
-    void AddFlank(BED &bed, int leftSlop, int rightSlop);
-    
-    // method to grab requested flank w.r.t. a single BED entry, 
-    // while choosing flanks based on strand
-    void AddStrandedFlank(BED &bed, int leftSlop, int rightSlop);
-};