--- a/BEDTools-Version-2.14.3/src/fastaFromBed/fastaFromBed.h	Thu Nov 03 10:25:04 2011 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,56 +0,0 @@
-/*****************************************************************************
-  fastaFromBed.h
-
-  (c) 2009 - Aaron Quinlan
-  Hall Laboratory
-  Department of Biochemistry and Molecular Genetics
-  University of Virginia
-  aaronquinlan@gmail.com
-
-  Licenced under the GNU General Public License 2.0 license.
-******************************************************************************/
-#ifndef FASTAFROMBED_H
-#define FASTAFROMBED_H
-
-#include "bedFile.h"
-#include "sequenceUtils.h"
-#include "Fasta.h"
-#include <vector>
-#include <iostream>
-#include <fstream>
-
-using namespace std;
-
-//************************************************
-// Class methods and elements
-//************************************************
-class Bed2Fa {
-
-public:
-
-    // constructor
-    Bed2Fa(bool useName, const string &dbFile, const string &bedFile, const string &fastaOutFile,
-        bool useFasta, bool useStrand);
-
-    // destructor
-    ~Bed2Fa(void);
-
-    void ExtractDNA();
-    void ReportDNA(const BED &bed, string &dna);
-
-
-private:
-
-    bool _useName;
-    string _dbFile;
-    string _bedFile;
-    string _fastaOutFile;
-    bool _useFasta;
-    bool _useStrand;
-
-    // instance of a bed file class.
-    BedFile  *_bed;
-    ostream *_faOut;
-};
-
-#endif