--- a/BEDTools-Version-2.14.3/src/closestBed/closestBed.h	Thu Nov 03 10:25:04 2011 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,61 +0,0 @@
-/*****************************************************************************
-  closestBed.h
-
-  (c) 2009 - Aaron Quinlan
-  Hall Laboratory
-  Department of Biochemistry and Molecular Genetics
-  University of Virginia
-  aaronquinlan@gmail.com
-
-  Licenced under the GNU General Public License 2.0 license.
-******************************************************************************/
-#ifndef CLOSESTBED_H
-#define CLOSESTBED_H
-
-#include "bedFile.h"
-#include <vector>
-#include <iostream>
-#include <fstream>
-
-using namespace std;
-
-//************************************************
-// Class methods and elements
-//************************************************
-class BedClosest {
-
-public:
-
-    // constructor
-    BedClosest(string &bedAFile, string &bedBFile, 
-               bool sameStrand, bool diffStrand, string &tieMode, 
-               bool reportDistance, bool signDistance, string &strandedDistMode,
-               bool ignoreOverlaps);
-
-    // destructor
-    ~BedClosest(void);
-
-    // find the closest feature in B to A
-    void FindClosestBed();
-
-private:
-
-    // data
-    string _bedAFile;
-    string _bedBFile;
-    string _tieMode;
-    bool   _sameStrand;
-    bool   _diffStrand;
-    bool   _reportDistance;
-    bool   _signDistance;
-    string _strandedDistMode;
-    bool   _ignoreOverlaps;
-
-    BedFile *_bedA, *_bedB;
-
-    // methods
-    void reportNullB();
-    void FindWindowOverlaps(BED &, vector<BED> &);
-
-};
-#endif /* CLOSEST_H */