--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/BEDTools-Version-2.14.3/src/sortBed/sortBed.h	Thu Nov 03 10:25:04 2011 -0400
@@ -0,0 +1,50 @@
+/*****************************************************************************
+  sortBed.h
+
+  (c) 2009 - Aaron Quinlan
+  Hall Laboratory
+  Department of Biochemistry and Molecular Genetics
+  University of Virginia
+  aaronquinlan@gmail.com
+
+  Licenced under the GNU General Public License 2.0 license.
+******************************************************************************/
+#include "bedFile.h"
+#include <vector>
+#include <algorithm>
+#include <iostream>
+#include <fstream>
+
+using namespace std;
+
+
+//************************************************
+// Class methods and elements
+//************************************************
+class BedSort {
+
+public:
+
+    // constructor
+    BedSort(string &);
+
+    // destructor
+    ~BedSort(void);
+
+    void SortBed();             // the default.  sorts by chrom (asc.) then by start (asc.)
+    void SortBedBySizeAsc();
+    void SortBedBySizeDesc();
+    void SortBedByChromThenSizeAsc();
+    void SortBedByChromThenSizeDesc();
+    void SortBedByChromThenScoreAsc();
+    void SortBedByChromThenScoreDesc();
+
+private:
+    string _bedFile;
+
+    // instance of a bed file class.
+    BedFile *_bed;
+
+    // methods
+
+};