--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/BEDTools-Version-2.14.3/src/fastaFromBed/fastaFromBed.h	Thu Nov 03 10:25:04 2011 -0400
@@ -0,0 +1,56 @@
+/*****************************************************************************
+  fastaFromBed.h
+
+  (c) 2009 - Aaron Quinlan
+  Hall Laboratory
+  Department of Biochemistry and Molecular Genetics
+  University of Virginia
+  aaronquinlan@gmail.com
+
+  Licenced under the GNU General Public License 2.0 license.
+******************************************************************************/
+#ifndef FASTAFROMBED_H
+#define FASTAFROMBED_H
+
+#include "bedFile.h"
+#include "sequenceUtils.h"
+#include "Fasta.h"
+#include <vector>
+#include <iostream>
+#include <fstream>
+
+using namespace std;
+
+//************************************************
+// Class methods and elements
+//************************************************
+class Bed2Fa {
+
+public:
+
+    // constructor
+    Bed2Fa(bool useName, const string &dbFile, const string &bedFile, const string &fastaOutFile,
+        bool useFasta, bool useStrand);
+
+    // destructor
+    ~Bed2Fa(void);
+
+    void ExtractDNA();
+    void ReportDNA(const BED &bed, string &dna);
+
+
+private:
+
+    bool _useName;
+    string _dbFile;
+    string _bedFile;
+    string _fastaOutFile;
+    bool _useFasta;
+    bool _useStrand;
+
+    // instance of a bed file class.
+    BedFile  *_bed;
+    ostream *_faOut;
+};
+
+#endif