--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/BEDTools-Version-2.14.3/src/closestBed/closestBed.h	Thu Nov 03 10:25:04 2011 -0400
@@ -0,0 +1,61 @@
+/*****************************************************************************
+  closestBed.h
+
+  (c) 2009 - Aaron Quinlan
+  Hall Laboratory
+  Department of Biochemistry and Molecular Genetics
+  University of Virginia
+  aaronquinlan@gmail.com
+
+  Licenced under the GNU General Public License 2.0 license.
+******************************************************************************/
+#ifndef CLOSESTBED_H
+#define CLOSESTBED_H
+
+#include "bedFile.h"
+#include <vector>
+#include <iostream>
+#include <fstream>
+
+using namespace std;
+
+//************************************************
+// Class methods and elements
+//************************************************
+class BedClosest {
+
+public:
+
+    // constructor
+    BedClosest(string &bedAFile, string &bedBFile, 
+               bool sameStrand, bool diffStrand, string &tieMode, 
+               bool reportDistance, bool signDistance, string &strandedDistMode,
+               bool ignoreOverlaps);
+
+    // destructor
+    ~BedClosest(void);
+
+    // find the closest feature in B to A
+    void FindClosestBed();
+
+private:
+
+    // data
+    string _bedAFile;
+    string _bedBFile;
+    string _tieMode;
+    bool   _sameStrand;
+    bool   _diffStrand;
+    bool   _reportDistance;
+    bool   _signDistance;
+    string _strandedDistMode;
+    bool   _ignoreOverlaps;
+
+    BedFile *_bedA, *_bedB;
+
+    // methods
+    void reportNullB();
+    void FindWindowOverlaps(BED &, vector<BED> &);
+
+};
+#endif /* CLOSEST_H */