diff BEDTools-Version-2.14.3/README.rst @ 0:dfcd8b6c1bda

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author aaronquinlan
date Thu, 03 Nov 2011 10:25:04 -0400
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+==============================
+          BEDTools         
+==============================
+
+Created by Aaron Quinlan Spring 2009.
+
+Copyright 2009,2010,2011 Aaron Quinlan. All rights reserved.
+
+Stable releases: http://code.google.com/p/bedtools
+
+Repository:      https://github.com/arq5x/bedtools
+
+Released under GNU public license version 2 (GPL v2).
+
+
+Summary
+-------
+BEDTools is a collection of utilities for comparing, summarizing, and 
+intersecting genomic features in BED, GTF/GFF, VCF and BAM formats. 
+
+
+Manual
+------
+See the extensive PDF manual included at: http://code.google.com/p/bedtools/downloads/detail?name=BEDTools-User-Manual.v4.pdf.
+
+This manual covers many common usage examples.  There are also examples available at:
+http://code.google.com/p/bedtools/wiki/Usage
+http://code.google.com/p/bedtools/wiki/UsageAdvanced
+
+Installation
+------------
+Git
+...
+git clone git://github.com/arq5x/bedtools.git
+
+Download tarball - that big gray button on the upper right.
+...........................................................
+#. Unpack the source downloaded tarball.
+#. cd into the expanded folder.
+#. Type "make clean" and hit enter.
+#. Type "make all" and hit enter.
+#. If you encountered no errors, then all of the BED Tools should now be in bin/
+  If not, try to troubleshoot then email me: aaronquinlan at gmail dot com
+#. Copy the files in bin/ to ~/bin or if you have the privileges, to /usr/local/bin.
+#. Use the tools.
+
+