Mercurial > repos > aaronquinlan > multi_intersect
diff BEDTools-Version-2.14.3/README.rst @ 0:dfcd8b6c1bda
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| author | aaronquinlan |
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| date | Thu, 03 Nov 2011 10:25:04 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/BEDTools-Version-2.14.3/README.rst Thu Nov 03 10:25:04 2011 -0400 @@ -0,0 +1,47 @@ +============================== + BEDTools +============================== + +Created by Aaron Quinlan Spring 2009. + +Copyright 2009,2010,2011 Aaron Quinlan. All rights reserved. + +Stable releases: http://code.google.com/p/bedtools + +Repository: https://github.com/arq5x/bedtools + +Released under GNU public license version 2 (GPL v2). + + +Summary +------- +BEDTools is a collection of utilities for comparing, summarizing, and +intersecting genomic features in BED, GTF/GFF, VCF and BAM formats. + + +Manual +------ +See the extensive PDF manual included at: http://code.google.com/p/bedtools/downloads/detail?name=BEDTools-User-Manual.v4.pdf. + +This manual covers many common usage examples. There are also examples available at: +http://code.google.com/p/bedtools/wiki/Usage +http://code.google.com/p/bedtools/wiki/UsageAdvanced + +Installation +------------ +Git +... +git clone git://github.com/arq5x/bedtools.git + +Download tarball - that big gray button on the upper right. +........................................................... +#. Unpack the source downloaded tarball. +#. cd into the expanded folder. +#. Type "make clean" and hit enter. +#. Type "make all" and hit enter. +#. If you encountered no errors, then all of the BED Tools should now be in bin/ + If not, try to troubleshoot then email me: aaronquinlan at gmail dot com +#. Copy the files in bin/ to ~/bin or if you have the privileges, to /usr/local/bin. +#. Use the tools. + +
