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comparison BEDTools-Version-2.14.3/src/fastaFromBed/Makefile @ 1:bec36315bd12 default tip

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author aaronquinlan
date Sat, 19 Nov 2011 14:17:03 -0500
parents dfcd8b6c1bda
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0:dfcd8b6c1bda 1:bec36315bd12
1 UTILITIES_DIR = ../utils/
2 OBJ_DIR = ../../obj/
3 BIN_DIR = ../../bin/
4
5 # -------------------
6 # define our includes
7 # -------------------
8 INCLUDES = -I$(UTILITIES_DIR)/bedFile/ \
9 -I$(UTILITIES_DIR)/version/ \
10 -I$(UTILITIES_DIR)/gzstream/ \
11 -I$(UTILITIES_DIR)/genomeFile/ \
12 -I$(UTILITIES_DIR)/lineFileUtilities/ \
13 -I$(UTILITIES_DIR)/sequenceUtilities/ \
14 -I$(UTILITIES_DIR)/fileType/ \
15 -I$(UTILITIES_DIR)/Fasta/ \
16
17 # ----------------------------------
18 # define our source and object files
19 # ----------------------------------
20 SOURCES= fastaFromBedMain.cpp fastaFromBed.cpp
21 OBJECTS= $(SOURCES:.cpp=.o)
22 _EXT_OBJECTS=bedFile.o sequenceUtils.o lineFileUtilities.o gzstream.o fileType.o Fasta.o split.o
23 EXT_OBJECTS=$(patsubst %,$(OBJ_DIR)/%,$(_EXT_OBJECTS))
24 BUILT_OBJECTS= $(patsubst %,$(OBJ_DIR)/%,$(OBJECTS))
25 PROGRAM= fastaFromBed
26
27
28 all: $(PROGRAM)
29
30 .PHONY: all
31
32 $(PROGRAM): $(BUILT_OBJECTS) $(EXT_OBJECTS)
33 @echo " * linking $(PROGRAM)"
34 @$(CXX) $(LDFLAGS) $(CXXFLAGS) -o $(BIN_DIR)/$@ $^ $(LIBS)
35
36 $(BUILT_OBJECTS): $(SOURCES)
37 @echo " * compiling" $(*F).cpp
38 @$(CXX) -c -o $@ $(*F).cpp $(LDFLAGS) $(CXXFLAGS) $(INCLUDES)
39
40 $(EXT_OBJECTS):
41 @$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/bedFile/
42 @$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/sequenceUtilities/
43 @$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/lineFileUtilities/
44 @$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/gzstream/
45 @$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/fileType/
46 @$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/Fasta/
47
48 clean:
49 @echo "Cleaning up."
50 @rm -f $(OBJ_DIR)/* $(BIN_DIR)/*
51
52 .PHONY: clean