Mercurial > repos > aaronquinlan > multi_intersect

comparison BEDTools-Version-2.14.3/src/intersectBed/Makefile @ 0:dfcd8b6c1bda

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author aaronquinlan
date Thu, 03 Nov 2011 10:25:04 -0400
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:dfcd8b6c1bda
1 UTILITIES_DIR = ../utils/
2 OBJ_DIR = ../../obj/
3 BIN_DIR = ../../bin/
4
5 # -------------------
6 # define our includes
7 # -------------------
8 INCLUDES = -I$(UTILITIES_DIR)/bedFile/ \
9 -I$(UTILITIES_DIR)/version/ \
10 -I$(UTILITIES_DIR)/gzstream/ \
11 -I$(UTILITIES_DIR)/genomeFile/ \
12 -I$(UTILITIES_DIR)/lineFileUtilities/ \
13 -I$(UTILITIES_DIR)/fileType/ \
14 -I$(UTILITIES_DIR)/BamTools/include \
15 -I$(UTILITIES_DIR)/BamTools-Ancillary \
16 -I$(UTILITIES_DIR)/chromsweep \
17
18 # ----------------------------------
19 # define our source and object files
20 # ----------------------------------
21 SOURCES= intersectMain.cpp intersectBed.cpp
22 OBJECTS= $(SOURCES:.cpp=.o)
23 _EXT_OBJECTS=bedFile.o lineFileUtilities.o BamAncillary.o gzstream.o fileType.o chromsweep.o
24 EXT_OBJECTS=$(patsubst %,$(OBJ_DIR)/%,$(_EXT_OBJECTS))
25 BUILT_OBJECTS= $(patsubst %,$(OBJ_DIR)/%,$(OBJECTS))
26 PROGRAM= intersectBed
27
28 all: $(PROGRAM)
29
30 .PHONY: all
31
32 $(PROGRAM): $(BUILT_OBJECTS) $(EXT_OBJECTS)
33 @echo " * linking $(PROGRAM)"
34 @$(CXX) $(LDFLAGS) $(CXXFLAGS) -o $(BIN_DIR)/$@ $^ -L$(UTILITIES_DIR)/BamTools/lib/ -lbamtools $(LIBS)
35
36 $(BUILT_OBJECTS): $(SOURCES)
37 @echo " * compiling" $(*F).cpp
38 @$(CXX) -c -o $@ $(*F).cpp $(LDFLAGS) $(CXXFLAGS) $(INCLUDES)
39
40 $(EXT_OBJECTS):
41 @$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/bedFile/
42 @$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/lineFileUtilities/
43 @$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/BamTools/
44 @$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/BamTools-Ancillary/
45 @$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/gzstream/
46 @$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/fileType/
47 @$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/chromsweep/
48
49 clean:
50 @echo "Cleaning up."
51 @rm -f $(OBJ_DIR)/* $(BIN_DIR)/*
52
53 .PHONY: clean