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comparison BEDTools-Version-2.14.3/src/coverageBed/Makefile @ 0:dfcd8b6c1bda

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author aaronquinlan
date Thu, 03 Nov 2011 10:25:04 -0400
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-1:000000000000 0:dfcd8b6c1bda
1 UTILITIES_DIR = ../utils/
2 OBJ_DIR = ../../obj/
3 BIN_DIR = ../../bin/
4
5 # -------------------
6 # define our includes
7 # -------------------
8 INCLUDES = -I$(UTILITIES_DIR)/bedFile/ \
9 -I$(UTILITIES_DIR)/version/ \
10 -I$(UTILITIES_DIR)/gzstream/ \
11 -I$(UTILITIES_DIR)/genomeFile/ \
12 -I$(UTILITIES_DIR)/lineFileUtilities/ \
13 -I$(UTILITIES_DIR)/fileType/ \
14 -I$(UTILITIES_DIR)/BamTools/include \
15 -I$(UTILITIES_DIR)/BamTools-Ancillary
16 # ----------------------------------
17 # define our source and object files
18 # ----------------------------------
19 SOURCES= coverageMain.cpp coverageBed.cpp
20 OBJECTS= $(SOURCES:.cpp=.o)
21 _EXT_OBJECTS=bedFile.o lineFileUtilities.o gzstream.o fileType.o BamAncillary.o
22 EXT_OBJECTS=$(patsubst %,$(OBJ_DIR)/%,$(_EXT_OBJECTS))
23 BUILT_OBJECTS= $(patsubst %,$(OBJ_DIR)/%,$(OBJECTS))
24 PROGRAM= coverageBed
25
26
27 all: $(PROGRAM)
28
29 .PHONY: all
30
31 $(PROGRAM): $(BUILT_OBJECTS) $(EXT_OBJECTS)
32 @echo " * linking $(PROGRAM)"
33 @$(CXX) $(LDFLAGS) $(CXXFLAGS) -o $(BIN_DIR)/$@ $^ -L$(UTILITIES_DIR)/BamTools/lib/ -lbamtools $(LIBS)
34
35 $(BUILT_OBJECTS): $(SOURCES)
36 @echo " * compiling" $(*F).cpp
37 @$(CXX) -c -o $@ $(*F).cpp $(LDFLAGS) $(CXXFLAGS) $(INCLUDES)
38
39 $(EXT_OBJECTS):
40 @$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/bedFile/
41 @$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/lineFileUtilities/
42 @$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/BamTools/
43 @$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/BamTools-Ancillary/
44 @$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/gzstream/
45 @$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/fileType/
46
47 clean:
48 @echo "Cleaning up."
49 @rm -f $(OBJ_DIR)/* $(BIN_DIR)/*
50
51 .PHONY: clean