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comparison BEDTools-Version-2.14.3/src/bamToBed/Makefile @ 0:dfcd8b6c1bda

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author aaronquinlan
date Thu, 03 Nov 2011 10:25:04 -0400
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-1:000000000000 0:dfcd8b6c1bda
1 UTILITIES_DIR = ../utils/
2 OBJ_DIR = ../../obj/
3 BIN_DIR = ../../bin/
4
5 # -------------------
6 # define our includes
7 # -------------------
8 INCLUDES = -I$(UTILITIES_DIR)/bedFile/ \
9 -I$(UTILITIES_DIR)/version/ \
10 -I$(UTILITIES_DIR)/gzstream/ \
11 -I$(UTILITIES_DIR)/lineFileUtilities/ \
12 -I$(UTILITIES_DIR)/fileType/ \
13 -I$(UTILITIES_DIR)/BamTools/include \
14 -I$(UTILITIES_DIR)/BamTools-Ancillary
15
16
17 # ----------------------------------
18 # define our source and object files
19 # ----------------------------------
20 SOURCES= bamToBed.cpp
21 OBJECTS= $(SOURCES:.cpp=.o)
22 _EXT_OBJECTS=BamAncillary.o
23 EXT_OBJECTS=$(patsubst %,$(OBJ_DIR)/%,$(_EXT_OBJECTS))
24 BUILT_OBJECTS= $(patsubst %,$(OBJ_DIR)/%,$(OBJECTS))
25 PROGRAM= bamToBed
26
27
28 all: $(PROGRAM)
29
30 .PHONY: all
31
32 $(PROGRAM): $(BUILT_OBJECTS) $(EXT_OBJECTS)
33 @echo " * linking $(PROGRAM)"
34 @$(CXX) $(LDFLAGS) $(CXXFLAGS) -o $(BIN_DIR)/$@ $^ -L$(UTILITIES_DIR)/BamTools/lib/ -lbamtools $(LIBS)
35
36 $(BUILT_OBJECTS): $(SOURCES)
37 @echo " * compiling" $(*F).cpp
38 @$(CXX) -c -o $@ $(*F).cpp $(LDFLAGS) $(CXXFLAGS) $(INCLUDES)
39
40 $(EXT_OBJECTS):
41 @$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/BamAncillary/
42
43 clean:
44 @echo "Cleaning up."
45 @rm -f $(OBJ_DIR)/* $(BIN_DIR)/*
46
47 .PHONY: clean