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comparison BEDTools-Version-2.14.3/src/annotateBed/Makefile @ 0:dfcd8b6c1bda

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author aaronquinlan
date Thu, 03 Nov 2011 10:25:04 -0400
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-1:000000000000 0:dfcd8b6c1bda
1 UTILITIES_DIR = ../utils/
2 OBJ_DIR = ../../obj/
3 BIN_DIR = ../../bin/
4
5 # -------------------
6 # define our includes
7 # -------------------
8 INCLUDES = -I$(UTILITIES_DIR)/bedFile/ -I$(UTILITIES_DIR)/lineFileUtilities/ -I$(UTILITIES_DIR)/version/ -I$(UTILITIES_DIR)/BamTools/ -I$(UTILITIES_DIR)/gzstream/ -I$(UTILITIES_DIR)/fileType/
9
10 # ----------------------------------
11 # define our source and object files
12 # ----------------------------------
13 SOURCES= annotateMain.cpp annotateBed.cpp
14 OBJECTS= $(SOURCES:.cpp=.o)
15 _EXT_OBJECTS=bedFile.o lineFileUtilities.o gzstream.o fileType.o
16 EXT_OBJECTS=$(patsubst %,$(OBJ_DIR)/%,$(_EXT_OBJECTS))
17 BUILT_OBJECTS= $(patsubst %,$(OBJ_DIR)/%,$(OBJECTS))
18 PROGRAM= annotateBed
19
20
21 all: $(PROGRAM)
22
23 .PHONY: all
24
25 $(PROGRAM): $(BUILT_OBJECTS) $(EXT_OBJECTS)
26 @echo " * linking $(PROGRAM)"
27 @$(CXX) $(LDFLAGS) $(CXXFLAGS) -o $(BIN_DIR)/$@ $^ $(LIBS)
28
29 $(BUILT_OBJECTS): $(SOURCES)
30 @echo " * compiling" $(*F).cpp
31 @$(CXX) -c -o $@ $(*F).cpp $(LDFLAGS) $(CXXFLAGS) $(INCLUDES)
32
33 $(EXT_OBJECTS):
34 @$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/bedFile/
35 @$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/lineFileUtilities/
36 @$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/gzstream/
37 @$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/fileType/
38
39 clean:
40 @echo "Cleaning up."
41 @rm -f $(OBJ_DIR)/* $(BIN_DIR)/*
42
43 .PHONY: clean